PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06990.1
Common NameLR48_Vigan01g222900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 181aa    MW: 19724.1 Da    PI: 4.8397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.5e-141361255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r ++  g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Vang11g06990.1 13 LYHGIR-CR-GGKWVTEIREPRK---TNRIWLGTFLTPEMAAAAYDVAALALKG 61
                    699999.55.7*********854...49**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.71E-131271No hitNo description
PfamPF008471.0E-71261IPR001471AP2/ERF domain
PROSITE profilePS5103218.3071369IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-161371IPR016177DNA-binding domain
SMARTSM003807.2E-241375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-241371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSSSSSKR HPLYHGIRCR GGKWVTEIRE PRKTNRIWLG TFLTPEMAAA AYDVAALALK  60
GGEAVLNFPD SVGRYPVPAS KSPEDIRSAA IAAAELMKPE ASHNNVNAVA QSDNTEGYGY  120
GYHNVVGPSY ETEFVDEEAI FSMPSLLVDM AEGMLLTPPR MSSPSDYWTE NYAGENLWNF  180
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508518.11e-116PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ904e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0L9TQ071e-132A0A0L9TQ07_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5P61e-132A0A0S3R5P6_PHAAN; Uncharacterized protein
STRINGGLYMA05G03540.27e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]